Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGIMNSLLKQKEMVVKDWLTYYVSVDDPYIFTLKN---DHRLMDETGFVLENLFIGMTEDLGKMNAFARELGKAQ--------FITSLGISRILFHIRLLE----------------------EFLLDYASEIKTKSANYRELYLFSIKLHQVFSSFTQNLIEGYTHANEQMIV-QKENQIIKESTKLIWIAENVFLLPLIGKITDERAKQ---ITETALFEVCEQPVNYLIIDLS--GVQLESPNIGKYIE---YFFSSLKLVGVTPIITGMQPQTAKVMVQANLTEQHGIKTFATLRQATKTLMKEKEARNAHK |
| 3PVT Chain:A ((1-304)) | MRSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEG------------TWVREAALAHAQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -58459 for 1757 contacts (-33.3/contact) +
2D Compatibility (PS) -27476 + (NN) -6177 + (LL) 1304
1D Compatibility (HY) -400 + (ID) 1800
Total energy: -93008.0 ( -52.94 by residue)
QMean score : 0.203
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