Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFKQKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
1V98 Chain:A ((49-138))
-------------------------------------------------------GAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP--------GLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLE----
General information:
TITO was launched using:
RESULT:
Template:
1V98.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31116 for 636 contacts (-48.9/contact) +
2D Compatibility (PS) -10044 + (NN) -8596 + (LL) 5928
1D Compatibility (HY) -6400 + (ID) 950
Total energy: -51178.0 ( -80.47 by residue)
QMean score : 0.729
(partial model without unconserved sides chains):
PDB file :
Tito_1V98.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V98-query.scw
PDB file :
Tito_Scwrl_1V98.pdb
: