Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDM-HGKSFQIAGEEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPEFVMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQTD--VMPLLEAYDQEIIPFSERE--G--FVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
1ZCH Chain:A ((1-249))
MNEVIKSLTDHRSIRSYTD-EPVAQEQLDQIIEAVQSAPSSINGQQVTVITVQDKERKKKISELAGGQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPKYVFPLSGLVIGHPADRSAKKPRLPQEAVNHQETYLNQDELTSHIQAYDEQMSEYMNKRTNGKETRNWSQSIASYYERLYYPHIREMLEKQGFKVEK
General information:
TITO was launched using:
RESULT:
Template:
1ZCH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155317 for 1787 contacts (-86.9/contact) +
2D Compatibility (PS) -26785 + (NN) -14296 + (LL) -172
1D Compatibility (HY) -16400 + (ID) 4900
Total energy: -217870.0 ( -121.92 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1ZCH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZCH-query.scw
PDB file :
Tito_Scwrl_1ZCH.pdb
: