Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKAMNM-NKFLIISFWDSEVFFHDWKKSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
1IUJ Chain:A ((1-102))
-----------------------------------------------------------------MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGTLPKEAFLGPNRLEAFEVVLDSE-
General information:
TITO was launched using:
RESULT:
Template:
1IUJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36059 for 649 contacts (-55.6/contact) +
2D Compatibility (PS) -10832 + (NN) -3198 + (LL) 4496
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -48843.0 ( -75.26 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_1IUJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IUJ-query.scw
PDB file :
Tito_Scwrl_1IUJ.pdb
: