Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LTKTLQDRMILPGNGTIPYIGLGVFQVTEQEFIAGAVEKAIEVGYRLFDTAAVYNNEAIVGQAIASSAVSREELFISSKVWNGDLGYDETLFAFERTLRNLKLDYLDLYLIHWPVA-GKYRDSWRAMERLHDEKLIKSIGVANFKQHHLSDLLVAANEKPVLNQVETHPLLPQNDLRKYLVEQNIAHAAWSPLAK---GILMQNPVITEIAKKHQASVDQVILQWHLNRNTIIFPKSITSSRIEENSRLSYFQLDASDMEKIDRLETGKRVGPDPDDLEYFLSSIERERAYLASENEE |
4Q3M Chain:C ((6-274)) | ----------LNNNYEMPIIGLGTFRSKKND-AYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKDSNIPREEIFVTTKLWNTDQGYEKTLEAFNTSLKNLGLDYIDLYLIHWFKGYDNALSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMENAKIPPMVNQVETHVTLQNHFLHDYCKKNNIQLEAYAPLMSHQIKDLLSNETMAKIAKKHDKTIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIRSVNTGKKIFTEFDNVDY------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q3M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137216 for 2250 contacts (-61.0/contact) +
2D Compatibility (PS) -28405 + (NN) -12567 + (LL) 2832
1D Compatibility (HY) -23200 + (ID) 5650
Total energy: -204206.0 ( -90.76 by residue)
QMean score : 0.542
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