Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENF--VTHSKNG--------YYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQD-KPVNDVVIEKINIK
2IGV Chain:A ((18-165))
-----------------------GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK---------------------------TEWLDGKHVVFGRVVEGLDVVKAVES--NGSQSGKPVKDCMI------
General information:
TITO was launched using:
RESULT:
Template:
2IGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51251 for 1023 contacts (-50.1/contact) +
2D Compatibility (PS) -14522 + (NN) -8887 + (LL) 4164
1D Compatibility (HY) -11600 + (ID) 3800
Total energy: -85896.0 ( -83.96 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_2IGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IGV-query.scw
PDB file :
Tito_Scwrl_2IGV.pdb
: