Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRLL-SIAFFGIAVI-CLLFPW-MSSGIDAATFELVYEPAYKLIWMQ----------------------------PI-IIVGYLGFLCTIFI-PKF---------QRGKNRIVPFIGILILVLGLLN-LAVRPLFGFDSFNFSIIDAYVSELVE--PAFLIAVSASILSLIMYAIYLKKSENL
4P79 Chain:A ((2-190))
--SEFMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAI-SWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTAAAS
General information:
TITO was launched using:
RESULT:
Template:
4P79.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119933 for 921 contacts (-130.2/contact) +
2D Compatibility (PS) -12607 + (NN) 1017 + (LL) 400
1D Compatibility (HY) 2800 + (ID) 400
Total energy: -128723.0 ( -139.76 by residue)
QMean score : 0.027
(partial model without unconserved sides chains):
PDB file :
Tito_4P79.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P79-query.scw
PDB file :
Tito_Scwrl_4P79.pdb
: