Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------------------------------------------------------------------------------------MGNGVQPLDPVAIQIGSISVKWYGVIIASAVVIALLLALSEANKRKMDKEIIVDLLIWAIPISIISARIYYVIFEWDFYKNNLGEIVKIWHGGIAIYGALIGAVLTAIIFSRIKKISFWQLADVVAPSLIIAQAIGRWGNFMNQEAHGAETTRSFLESLHLPDFIINQMYIDGAYYQPTFLYESLWNVLGFVILLIIRRTKI-------RRGELFLGYVIWYSFGRFFIEGMRTDSLMWGDFRVSQALSLLLIVLSIGIIIYRR-LKMNPPYYMEDKFGKVVKKK--------------------------------- |
| 4QLA Chain:A ((19-442)) | LDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYG--------------FSDAAVRPG---------LAAAEVAVIFKNLMARLGYKQYYVQGGDWGALIGSAMATFFPKEIIGFHSNMALTLSPAATFLEFVGALFPSLIVEPELANRLYPLSEKYSTLLEELGYMHIQATKPDTVGIGLTDS----PAGLLAYILEKFSTWTNPDLRSKEDGGLSYRWTKDQLIDNLMLYWSTKS-IVTSMRLYAESFSSRHFDLKLDEIQVQVPTWVLQAKHELAYQPPCILKMKYPKLVNASVIEDGGHFLAFELPEIFAKDVLKAIGEFRKLKN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QLA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123249 for 1728 contacts (-71.3/contact) +
2D Compatibility (PS) -25125 + (NN) 9698 + (LL) 3812
1D Compatibility (HY) -8000 + (ID) 1700
Total energy: -144564.0 ( -83.66 by residue)
QMean score : 0.160
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