Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPSEGSRKERNRVGRGTGSGN-GKTSGRGHKGQKARSGGG-------------VRLGFEGGQLPLFRRIPKRGFTNINR--KEFAIVNLDVLNRF------EDGTEVTPELLVETGIIRNEKSG-IKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI-------
1JJ2 Chain:K ((1-150))
----------TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKS-------------------GFKRPQKVQEEAATIDVREIDENVTLLAADDVAEFRVDVRDVVEEAD--DADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQ
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11159 for 692 contacts (-16.1/contact) +
2D Compatibility (PS) -13060 + (NN) -7010 + (LL) 1876
1D Compatibility (HY) -1600 + (ID) 1650
Total energy: -32603.0 ( -47.11 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: