Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKST----------------DGKEITDIVTNALSVF-----PHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 3RQZ Chain:A ((2-228)) | -------------------------------------NAMRILIISDVHANLV--------------------------ALEAVLSDAG--RVDDIWSLGDIVGYGPRP--RECVELVRVL----APNISVIGNHDWACIGRLS-------------L-------D--N--------------------PVARFA--S-----------YWTTMQLQAEHLQYLESLPNRMI---DGDWTVVHGSPRHPIWE----Y-IYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAVGQPRDGDPRASYAIFEPDA--QRVTFHRVEYRIADTQAQ------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3RQZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -63245 for 1751 contacts (-36.1/contact) +
2D Compatibility (PS) -21463 + (NN) 3459 + (LL) 10948
1D Compatibility (HY) -4800 + (ID) 1650
Total energy: -76751.0 ( -43.83 by residue)
QMean score : 0.398
|
|
|