Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILYSAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLRWLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW
4KHP Chain:G ((9-155))
---------RQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
General information:
TITO was launched using:
RESULT:
Template:
4KHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46699 for 1094 contacts (-42.7/contact) +
2D Compatibility (PS) -15957 + (NN) -6213 + (LL) 320
1D Compatibility (HY) -13600 + (ID) 3900
Total energy: -86049.0 ( -78.66 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_4KHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KHP-query.scw
PDB file :
Tito_Scwrl_4KHP.pdb
: