Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKTIMLVCSAGMSTSLLVTKMEKAAEAQGIEAKIFAVAEAEAANHL-DEIDVLLLGPQVRFLEGN-MKKKLEPKGIPLAVIN-SVDYGMMKGDKVLEQALELMK
3NBM Chain:A ((5-108))
KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAH-YDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61422 for 761 contacts (-80.7/contact) +
2D Compatibility (PS) -10780 + (NN) -4540 + (LL) 144
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -78548.0 ( -103.22 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: