Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTFIVKKEHISQYPNPLFVNKNESIWVFEEDTEYPGWIFCKV--------KSSGKEGWIPKQIIQISNDGK------SGTVSE---------DYSARELNVKPGDKLESNRELNGWVWCVTEENEAGWVPRENLEV
3H41 Chain:A ((58-175))
--------------NKLETQALLGQEVTVVDKK---GDWVKVLVHGQPTPRNEE-GYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKNDGT-
General information:
TITO was launched using:
RESULT:
Template:
3H41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6636 for 565 contacts (-11.7/contact) +
2D Compatibility (PS) -10699 + (NN) -4951 + (LL) 1724
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -24412.0 ( -43.21 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_3H41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H41-query.scw
PDB file :
Tito_Scwrl_3H41.pdb
: