Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK----YHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK----------
2ZYC Chain:A ((2-164))
-------------------------------------------AQAFVDATWPQAAKAAQSLGVPAHFLVAQAALETGWGKSQIRNKDGTPSYNLFNIKAGSNWTGKVVEARTV-KVRVERFRAYDSYEQAFQDYADLVGN-----SPRYAKVAGKTDGHAFARALQEGGYATDPSYADKLARVINGNALRQRLMASAASARGLE
General information:
TITO was launched using:
RESULT:
Template:
2ZYC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54095 for 1069 contacts (-50.6/contact) +
2D Compatibility (PS) -15066 + (NN) -2457 + (LL) 3604
1D Compatibility (HY) -6000 + (ID) 1700
Total energy: -75714.0 ( -70.83 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2ZYC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZYC-query.scw
PDB file :
Tito_Scwrl_2ZYC.pdb
: