Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTRNVLAISGNDIFSGGGLHADLATYVVNKLHGFVAVTCLTAMSDKGF--EVIPIEASILKQQLESLKDVEFGSIKLGLLPNVETAQVVLEFVKSKQECPVVLDPVLVCKENHDLEVSQLREQLIAFF-PYADVITPNLVEAQLLTGLS-IENLDQMKIAAEKLYDMGAKHVVIKGGNRLNAEEATDLYYDGERFETYVFPVVDAN-NTGAGCTFASSIASQLAMGKNVEDAVKMSKGFVYQAI----KASDKYGVVQHF
4C5J Chain:D ((4-260))
---KKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDVFEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMV-----EVLNPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKALDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHG
General information:
TITO was launched using:
RESULT:
Template:
4C5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152102 for 2178 contacts (-69.8/contact) +
2D Compatibility (PS) -27080 + (NN) -11877 + (LL) 512
1D Compatibility (HY) -14400 + (ID) 4550
Total energy: -209497.0 ( -96.19 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4C5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C5J-query.scw
PDB file :
Tito_Scwrl_4C5J.pdb
: