Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDYNKLKQETKAIVVDIIERSALKKGQIFVLGLSSSEVSGGLIGKNSSSEIGEIIVEVILKELHSRGIYLAVQGCEHVNRALVVEAELAERQQLEVVNVVPNLHAGGSGQVAAFKLMT----SPVEVEEIVAHAGIDIGDTSIGMHIKRVQVPLIPISRELGGAHVTALASRPKLIGGARAGYTSDPIRKF-
3C1D Chain:B ((8-161))
-----GPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNG----PEEIDATAEDYERVIAWCHEHG---------YLDDSRFVARFIASRSR------------KGYGPARIRQELNQKGISREATEKAMREADIDWAALARDQATRKYGEP-LPTVFSEKVKIQRFLLYR---------GYLMEDIQDIW
General information:
TITO was launched using:
RESULT:
Template:
3C1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44700 for 996 contacts (-44.9/contact) +
2D Compatibility (PS) -16077 + (NN) -8976 + (LL) 3428
1D Compatibility (HY) 2000 + (ID) 1150
Total energy: -65475.0 ( -65.74 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_3C1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C1D-query.scw
PDB file :
Tito_Scwrl_3C1D.pdb
: