Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQ-AYADLHGTAHLPIKPKTKVAIVTCMDSRL--HVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMH-----GHDFL-PFNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
1G5C Chain:D ((5-163))
------DILRENQD----------SP-----KLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRM-RELGVEEEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPESIGVHGLIIDINTGRLKPLY
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99344 for 988 contacts (-100.6/contact) +
2D Compatibility (PS) -15482 + (NN) -13156 + (LL) 1416
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -143616.0 ( -145.36 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: