Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLESYEEIAAYIDSTKKVVFFFTADWCPDCQFIYPVMPSIEKDFSD-FVFVRVNRDDYIELAQQWNIFGIPSFVVVENGQELGRLVNKNRK--TKAEITKFLAEINHK
2YNX Chain:B ((9-106))
----ENFDEVIK--KNNKVVVVDFWAEWCGPCRMIAPIIEELAKEYAGKVVFGKLNVDENPEIAAKYGIMSIPTLLFFKNGKVVDQLVGAMPKEALKERIKKYL------
General information:
TITO was launched using:
RESULT:
Template:
2YNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71913 for 651 contacts (-110.5/contact) +
2D Compatibility (PS) -10301 + (NN) -2615 + (LL) 1540
1D Compatibility (HY) -11600 + (ID) 1550
Total energy: -96439.0 ( -148.14 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_2YNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YNX-query.scw
PDB file :
Tito_Scwrl_2YNX.pdb
: