Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSALLKFDFSVVRHNMAIKLNNNFLIIMGTSFLLLLAYHIKKEGKEVLSSLFVISNFFDNSTLFFVIIVVMRVVAGTFGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPFFEGGRVLDLFSGSGSLAIEAISRGMDQAVLVEKDRRAQVVIQENIAMTKSPEQFQLLKMEANRALEQLTGQFDLVLLDPPYAKEEIVKQIQIMD-S--KGLLGDDIMIVCETDKSVDLPEEIASFGIWKQKIYGISKVTVYVR
2FPO Chain:A ((15-190))
------------------------------------------------------------------------RIIGGQWRGRKLPVPDS------TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLE---ETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQVAYRLYQR
General information:
TITO was launched using:
RESULT:
Template:
2FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101593 for 1325 contacts (-76.7/contact) +
2D Compatibility (PS) -18316 + (NN) -6925 + (LL) 7764
1D Compatibility (HY) -10400 + (ID) 2450
Total energy: -131920.0 ( -99.56 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FPO-query.scw
PDB file :
Tito_Scwrl_2FPO.pdb
: