Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIYFKASVKPFVPKSVVREVEKMSEE
4NAH Chain:E ((6-157))
----AVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSG-LLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK-
General information:
TITO was launched using:
RESULT:
Template:
4NAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104385 for 1137 contacts (-91.8/contact) +
2D Compatibility (PS) -16516 + (NN) -6730 + (LL) 696
1D Compatibility (HY) -12800 + (ID) 3200
Total energy: -142935.0 ( -125.71 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_4NAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAH-query.scw
PDB file :
Tito_Scwrl_4NAH.pdb
: