Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRVIKVKTISETLDYISKHTA-SVARFGDGEIDIIAGNSIPYQVYDSELAKRLERLLNRQSNEKLVICVSDVFDNLGRYNDFSQQFWRDHLYQYNDLYQKNCQAEWYGSTFISRPYMDLLDKSLSVTYFEQLKALWKN---------KDILIVEGETSRSGVGNDLFNDANTISRIICPSKDAFSSFYEIKETILEHSRGKLILLMLGPTAKLLAEDLSQLGHQAIDLGHIDSEYEWFKMGAVSKVKLSHKHTAEH---NFDEDITLIEDNSYENQIV--SKIGTSDRQYALT---VTLTDDIWE---LEHLLQRCPNTNFHIAAPVYCSDRLKQLVGYPNYYLHEAITEEQFEVLLLNSDIYLDINHGEEVWNVVD------RCITEGKTIYG--IRRARKDNQYISFERTMDDFEYLCDTIKQNR |
| 4O6D Chain:A ((19-377)) | LYFQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEG------VC------GLRSVSRLEHQMWEAVKDELNTLLKEN-------------------GVDLSVVVEKQ-EGMYKSAPKRLTATANNTFVVDGPETKE-----------------CPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSY-WIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSES--CGHRGP---------ATRTTTES---------------GKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4O6D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48376 for 2235 contacts (-21.6/contact) +
2D Compatibility (PS) -31309 + (NN) 6556 + (LL) 6072
1D Compatibility (HY) -8400 + (ID) 2750
Total energy: -78207.0 ( -34.99 by residue)
QMean score : 0.194
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