Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILREFCAENLTDLTRLDKAIISRVELCDNLAAGGTTPS----YGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQ--G--LPLVFHMAFDVIPKSDQKKAIDQLVALGFTRIL------LHGSSNGEPIIENIKHIKALVEYAN---NRIEIMVGGGVTAENYQYICQETGVRQAHGTRITQ
1TQJ Chain:A ((22-201))
------------EIKAVDEAGADWIHVDV--MDGRFVPNITIGPLIVDAIRPLTK-KTLDVHLMIV-EP-------------EKYVEDFAKAGADIISVHVEHNAS----PHLHRTLCQIRELGKKAGAVLNPST-------PLDFLEYVL-PVCDLILIMSVNP----Q--SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLE-AGANAIVAGSAVF
General information:
TITO was launched using:
RESULT:
Template:
1TQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103226 for 1172 contacts (-88.1/contact) +
2D Compatibility (PS) -16691 + (NN) -3177 + (LL) 2792
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -126802.0 ( -108.19 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1TQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQJ-query.scw
PDB file :
Tito_Scwrl_1TQJ.pdb
: