Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTYKDYTGLDRTELLSKVRHMM----SDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQLDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQ---DILAAIAKHTVGSA-----QMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD |
2PJQ Chain:A ((6-127)) | ---------QLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID---------------------------AHQ-DLIVQLNA-QNVTADDQTAIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PJQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41747 for 748 contacts (-55.8/contact) +
2D Compatibility (PS) -10598 + (NN) -4199 + (LL) 1996
1D Compatibility (HY) 800 + (ID) 1000
Total energy: -54748.0 ( -73.19 by residue)
QMean score : 0.535
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