Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------MIKYQDDFYQAVNGEWAKTAVIPDDKPRTGGFSDLADDIEALMLSTTDKWLADENKPS----DTILNH-----FIAFH----KMTA--DYQKREEVGVSPVLP------------LIEEYKGLQSFSEFASKVAE-------------YELEGKPNEFPF--------GVAPDFMN----AQLNVLWAEAPGII----LPDTTYYSEDNEKGKELLAFWRKSQEDLLPLFGL----------SEQEIKDILDKVLALDAKLAQYVLSR---EESSEYVKLYHP------YNWEDFTKLAPELPLDAIFQKIL--GQKPDKV------IVPEERF----WTEFASDYYSESNWELLKADLILSAANAYNAYLTDDIRIKSG---VYSRALSGTPQAMDKKKAAYYLAS--GPYNQALGLW-YAGEKF------------------SPEAKADVEHKIATMIDVYKSRLE----------------------KADWLAQSTREKAIMKLNVITP-----HIGYPEKLPETYT--KKIIDPKL---------------SLVENATNLDKISIAYGWS------KWNKPVDRSEWHMP----AHMVNAYYDPQQNQIVFPAAILQEPF------YALEQSSSANY-GGIGAVIAHEISHAFDTNG-------ASFDEHGSLNNW--WTDEDFEAFKKLTDKVVEQFDGLESYGAKVNGKLTVSENVADLGGVACALEAAQRESDFSAR---------------------DFFI----------NFATIWRMKARD----EYMQMLAS------------VDVHAPAQWRTNITVTNFEEFHKEFDVKDGDNMWRPVEKRVIIW------------- |
| 4F1N Chain:A ((12-1046)) | DTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWW-KTAFIFTYHIDFKLSKPKKYELIEALLDEDEILYKYRDRIAFNGEDTIYSHVPLEEFTLFDGCWEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINRSSKGIVGFTRESAVSMRNTIDYFKRKYDITLKYPDMKLVNLGGKNDVVPPECLTIVPGQKLKGQIFDTKTYIDFSAIRPTEKFDLISRLSMPAIKRGLTDSENSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKPTFETSPGEISLLNLLENIPSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDKESNLPILVLGSDVTHYPEKDQNSIASLVGSYDDKFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGE-EVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQA---TVSKNVLLPQVNDNIKSVMYYI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F1N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57995 for 3941 contacts (-14.7/contact) +
2D Compatibility (PS) -64925 + (NN) -8320 + (LL) 580
1D Compatibility (HY) -27200 + (ID) 6100
Total energy: -163960.0 ( -41.60 by residue)
QMean score : 0.157
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