Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSKILLQLMQGKIVAVIRGNSQEEAFQAAQACIKGGISAIEIAYTNSKASQVIEQLVTQYTNQEQVVVGAGTVLDSETARMAILAGAKFIVSPAFNLQTAKLCNRYAIPYLPGCMTLSEVTTALEAGCEIIKIFPGGTLGTSFISSLKAPL-PQVQIMVTGGVNLTNAKDWFLSGVTAIGIGGEFNKLAALGEFDKITEMAKQYKIQLNLN
2V82 Chain:A ((3-199))
--------WQTKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAY--GDKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQ--SVERTAQQAAAFVKAYREA
General information:
TITO was launched using:
RESULT:
Template:
2V82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166389 for 1750 contacts (-95.1/contact) +
2D Compatibility (PS) -21525 + (NN) -13162 + (LL) 1044
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -212882.0 ( -121.65 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_2V82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V82-query.scw
PDB file :
Tito_Scwrl_2V82.pdb
: