Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTIGVLGLQGAVR-EHIHAIEACGAAGLVVKRP---EQL--NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGS----DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHN-GRIVAAKQ--GQFLGCSFHPELTED---HRVTQLFVEMVEEYKQKALV
2YWB Chain:A ((1-214))
--MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPD-----APRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA---EYGKALLTRHEG------------PLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAG--------
General information:
TITO was launched using:
RESULT:
Template:
2YWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120996 for 1398 contacts (-86.5/contact) +
2D Compatibility (PS) -16810 + (NN) 1454 + (LL) 1980
1D Compatibility (HY) -10000 + (ID) 1700
Total energy: -146072.0 ( -104.49 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2YWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWB-query.scw
PDB file :
Tito_Scwrl_2YWB.pdb
: