Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
4HDC Chain:B ((4-205))
----FITFEGPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEGND--MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN-S------DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI--
General information:
TITO was launched using:
RESULT:
Template:
4HDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106509 for 1574 contacts (-67.7/contact) +
2D Compatibility (PS) -22076 + (NN) -13999 + (LL) 980
1D Compatibility (HY) -20400 + (ID) 5350
Total energy: -167354.0 ( -106.32 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4HDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HDC-query.scw
PDB file :
Tito_Scwrl_4HDC.pdb
: