Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEA--GI-SLEAIKHFA-GKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDI-E------------------------------HDGKTIFEGLKN-PLVATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA
4WIN Chain:A ((20-241))
KILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVE-LKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVT--KIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNIC-----
General information:
TITO was launched using:
RESULT:
Template:
4WIN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109697 for 1606 contacts (-68.3/contact) +
2D Compatibility (PS) -19776 + (NN) -7833 + (LL) 724
1D Compatibility (HY) -8400 + (ID) 2450
Total energy: -147432.0 ( -91.80 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4WIN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WIN-query.scw
PDB file :
Tito_Scwrl_4WIN.pdb
: