Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVTGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASA-REDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYRKRNPVGE
1V2X Chain:A ((19-172))
---------------------------------------------------------------------------------------------RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTG--GVPTFNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAG-
General information:
TITO was launched using:
RESULT:
Template:
1V2X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105729 for 1237 contacts (-85.5/contact) +
2D Compatibility (PS) -17316 + (NN) -10571 + (LL) 8528
1D Compatibility (HY) -6400 + (ID) 2450
Total energy: -133938.0 ( -108.28 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1V2X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V2X-query.scw
PDB file :
Tito_Scwrl_1V2X.pdb
: