Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILYKSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW
4KHP Chain:G ((9-155))
---------RQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
General information:
TITO was launched using:
RESULT:
Template:
4KHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39805 for 1094 contacts (-36.4/contact) +
2D Compatibility (PS) -15980 + (NN) -6739 + (LL) 320
1D Compatibility (HY) -13200 + (ID) 3850
Total energy: -79254.0 ( -72.44 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_4KHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KHP-query.scw
PDB file :
Tito_Scwrl_4KHP.pdb
: