Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIPEKKSIAIMKELSIGNTKQMLMINGVDVKNPLLLFLHGGPGTPQIGYVRHYQKELEQYFTVVHWDQRGSGLSYSKRIS-HHSMTINHFIKDTIQVTQWLLAHFSKSKLYLAGHSWGSILALHVLQQRPDLFYTYYGISQVVNPQDEESTAYQHIREISESKKASILSFLTRFIGAPPWKQDIQHLIYRFCVELTRGGFTHRHRQSLAVLFQMLTGNEYGVRNMHSFLNGLRFSKKHLTDELYRFNAFTSVPSIKVPCVFISGKHDLIVPAEISKQYYQELEAPEKRWFQFENSAHTPHIEEPSLFANTLSRHARHHL |
1WOM Chain:A ((6-270)) | ---------------SILSRNHVKVKGS--GKASIMFAPGFGCDQSV-WNA-VAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEAL----DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQ---LLGLLEMMEKN--YIGW-----A--TVFAATV--LNQPD-R-PEI---KEELESR-FCSTDP-----V--IA-RQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHL--PYSSLKQMEARGHCPHMSHPDETIQLIGDYLKAH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141512 for 2302 contacts (-61.5/contact) +
2D Compatibility (PS) -27222 + (NN) -5517 + (LL) 4996
1D Compatibility (HY) -8000 + (ID) 2250
Total energy: -179505.0 ( -77.98 by residue)
QMean score : 0.356
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