Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDK-LKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK
4JI3 Chain:M ((2-119))
-ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAG---
General information:
TITO was launched using:
RESULT:
Template:
4JI3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39350 for 729 contacts (-54.0/contact) +
2D Compatibility (PS) -12391 + (NN) -2881 + (LL) 400
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -68972.0 ( -94.61 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_4JI3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JI3-query.scw
PDB file :
Tito_Scwrl_4JI3.pdb
: