Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMMIKKRIKQVK-KGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDIN-RKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL
2Q1Z Chain:A ((11-183))
--TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRASVATWIFTIARNRRIDGLRKDRQPEPEDLFWG-----------PDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQHM---
General information:
TITO was launched using:
RESULT:
Template:
2Q1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56063 for 1131 contacts (-49.6/contact) +
2D Compatibility (PS) -17741 + (NN) -3666 + (LL) 1148
1D Compatibility (HY) -4000 + (ID) 1850
Total energy: -82172.0 ( -72.65 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2Q1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q1Z-query.scw
PDB file :
Tito_Scwrl_2Q1Z.pdb
: