Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLT--QLETMKDKIQTLDYLFQNCKPEFLGGTVDEWL--NENSSDTIEKSVDMIRHHPLVPSY-----VKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
4O1J Chain:A ((45-211))
--GGQAPEILWIGCSDSRCPET--TILGMQPGDVFVHRNIANIVSPTDINTTAVIEYAVAHLKVKHIVLCGHSACGGAAGALSDGRIGGVLDTWLLPLKTVRYNHAEELDAI-TDEKERVIRIAQLNVEAGIKVLMNNPTIREAIAERGLEVHGVFFDIGCGRIKELGCGTA------------
General information:
TITO was launched using:
RESULT:
Template:
4O1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50396 for 1226 contacts (-41.1/contact) +
2D Compatibility (PS) -16342 + (NN) 1515 + (LL) 924
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -69699.0 ( -56.85 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_4O1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O1J-query.scw
PDB file :
Tito_Scwrl_4O1J.pdb
: