Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGK-DAIPVLVEALKEE-GSLCNIAAAVLGEFGEDASEAAEELSCLLKSHAEDTRMAAAISLMRIGKPS-LPFVIKIAQESEGQSCFWASWCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
4XL5 Chain:C ((15-134))
------KVEMYIKNLQDDSPPVRVYAAFALGKIGDERAVEPLIKALKDEDASVRYAAATALGQIGDER--AVEPLIKALKDEDGYVRTAAAEALGQIGDERAVEPLIKALKDEDPWVRLTAARALGEI----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4XL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85174 for 966 contacts (-88.2/contact) +
2D Compatibility (PS) -12225 + (NN) -6227 + (LL) 2872
1D Compatibility (HY) -1600 + (ID) 1800
Total energy: -104154.0 ( -107.82 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_4XL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XL5-query.scw
PDB file :
Tito_Scwrl_4XL5.pdb
: