Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------MADRYVLIEVNEDGEGRLKDEAVTWIDFR------LSIVDFNASEGLNQLMEQISKDVK-----DELVLVLFNYRVKSSYDSWSGATEYEDFFDVEFFKVIKKNYKKFYQGLVTVELDVGINGFDNIE-----SMPTDSNQNYYRNLIAEW-EEFYNEDFIPLSLNKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4UMW Chain:A ((124-730))RLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATTLVGLYPIARQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEGWAASRV------SALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL---SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIEEAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTAIHPATGISESELLTLAAAVEQGATHPLAQAIVREAQVAELAIPTAESQRALVGSGIEAQVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAATAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEDKVKAVTKLNQHAPLAMVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANIRQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLR


General information:
TITO was launched using:
RESULT:

Template: 4UMW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 360 -18759 -52.11 -132.10
target 2D structure prediction score : 0.41
Monomeric hydrophicity matching model chain A : 0.50

3D Compatibility (PKB) : -52.11
2D Compatibility (Sec. Struct. Predict.) : 0.41
1D Compatibility (Hydrophobicity) : 0.50
QMean score : 0.038

(partial model without unconserved sides chains):
PDB file : Tito_4UMW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4UMW-query.scw
PDB file : Tito_Scwrl_4UMW.pdb: