Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQAGSSVAVIQERQALLARQHDAVAEADRELADVLASAHAAMRESVR--RLDAIAAELDRAVPDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR
2KPM Chain:A ((1-105))
-----------MDQKSSSPQPAAQAPETKQAFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRL----YGYKKLSDLVKARTDLFVTEERQVP--GSTQKALYLRAKLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17310 for 585 contacts (-29.6/contact) +
2D Compatibility (PS) -10456 + (NN) -1391 + (LL) 1156
1D Compatibility (HY) -400 + (ID) 600
Total energy: -29001.0 ( -49.57 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_2KPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KPM-query.scw
PDB file :
Tito_Scwrl_2KPM.pdb
: