Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGP-VYDAERFGARLVASP---------------------QHADALLVTGVVTHNM--------------AGPLRKTLEATPRPRVVIACGDCALNRGVFADAYG--VVGAVGEVV------PVDVEIAGCPPTPAAIMAALRSVTGK
2WPN Chain:A ((41-209))
---------------------------------RPPVFWLQGQGCTGCSVTLLNSVHPSIADVLLKVISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGTVVLALD-
General information:
TITO was launched using:
RESULT:
Template:
2WPN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79312 for 1005 contacts (-78.9/contact) +
2D Compatibility (PS) -13120 + (NN) -3702 + (LL) 2296
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -100538.0 ( -100.04 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_2WPN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WPN-query.scw
PDB file :
Tito_Scwrl_2WPN.pdb
: