Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVWITGAGGMMGSHLAEMLLAAGHDVYATYCRP-TIDPSD-LQ-FNGAEVDITDWCSVYDSIATFRPDAVFHLAAQSYPAVSWARPVETLTTNMVGTAIVFEALRRVR-PHAKIIVAGSSAEYGFVDPSEVPINERRELRPLHPYGVSKAATDMLAYQYHKSYGMHTVVARIFNCTGPRKVG-DALSDFVRRCTWLEHHPEQSAIRVGNLKTKRTIVDVRDLNRALMLMLDKGEAGADYNVGGSIAYEMGDVLKQVIAACKRDDIVPEVDPALLRPTDEKIIYGDCSKLAAITGWQQEICLTQTIADMFDYWRSKSESALMV |
| 4LW8 Chain:A ((19-322)) | RRAFVTGLTGFTGRYMAERLQAAGYDVWGTVAPGTPRPADPAFAQCTLLPVDLLDAEAMRAAAADARPDAVVHLAARA-------EPSQTYAVNIVGTRNLLAALSGLDRRPSAVLLASSANIYGN-ST-AGVLDETVAPAPANDYAVSKLAMEYAAKLWAD--RLPIVIARPFNYTGVGQSDAYLLPKLVAHYA----RNA-PRISLGNLDVSRDFSDVRDVTAAYLKLIEAAPAGETFNVCSERAYSLKEVLAMLS-RIAGYVIDVTIDPRFVRHNEVKSLSGSRDKLRRAVGELPVTPLDETLRWMVDAMRAA------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4LW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -168501 for 2470 contacts (-68.2/contact) +
2D Compatibility (PS) -31857 + (NN) -17525 + (LL) 2300
1D Compatibility (HY) -14000 + (ID) 4350
Total energy: -233933.0 ( -94.71 by residue)
QMean score : 0.497
|
|
|