Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGN-GTVQATVSTTVEVEGSAKPACVAESIVRYVA
4E3E Chain:A ((6-149))
-NPGNFFEDFR--LGQTIVHATPRTITEGDVALYTSLYGSRFALTSSTPFAQSLGLERAPIDSLLVFHIVFGKTVPD--I-SLNAIANLGYAGGRFGAVVYPGDTLSTTSKVIGLRQNKDGKTGVVYVHSVGVNQWD-EVVLEYIRWVMVR-
General information:
TITO was launched using:
RESULT:
Template:
4E3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59280 for 1043 contacts (-56.8/contact) +
2D Compatibility (PS) -15659 + (NN) -7106 + (LL) 992
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -86553.0 ( -82.98 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_4E3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E3E-query.scw
PDB file :
Tito_Scwrl_4E3E.pdb
: