Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGISRRTFGLAAGFGAIGAGGLGGGCSTRSGPTPTPEPASRGVGVVLSHEQFRTDRLVAHAQAAEQAGFRYVWASDHLQPWQD---NEGHSMFPWLTLALVGNSTSSILFGTGVTCPIYRYHPATVAQAFASLAILNPGRVFLGLGTGERLNEQAATDTFG--NYRERHDRLIEAIVLIRQLWSGE---------------------RISFTGHYFRTDELKLYDTPAM-PPPIFVAASGPQSATLAGRYGDGWIAQARDIN-DAKLLAAFAAGAQAAGRDPTTLGKRAELFAVVGDDKAAARAADLWRFTA--------GAVDQPNPVEIQRA--AES----NPIEKVL-ANWAVGTDPGVHIGAVQAVLD-AGAVPFLHFPQDDPITAIDFYRTNVLPELR |
| 1TVL Chain:A ((34-408)) | ----------------------------------------------------TNIEFYMKKAQTAEKGLFSFIFIADGLFISEKSIPHFLNRFEPITILSALASVTKNIGLVGTF-STSF-TEPFTISRQLMSLDHISGGRAGWNLVTSPQEGAARNHSKSNLPEHTERYEIAQEHLDVVRGLWNSWEHDAFIHNKKTGQFFDQAKLHRLNHKGKYFQVEGPLNIGRSKQGEPVVFQAGSSETGRQFAAKNADAIFTHSNSLEETKAFYADVKSRAADEGRDPSSVRIFPGISPIVADTEEEAEKKYREFAELIPIENAVT-------------EAKARNLTLREVAQEMAFPRTLFIGTPERVASLIETWFNAEAADGFIVGS--DIPGTLDAFVEKVIPILQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TVL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134277 for 2252 contacts (-59.6/contact) +
2D Compatibility (PS) -31874 + (NN) -17779 + (LL) 1620
1D Compatibility (HY) -7200 + (ID) 2650
Total energy: -192160.0 ( -85.33 by residue)
QMean score : 0.420
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