Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRN----HGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASG-LWP-GKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHFVRPGWRLPRRTAESALRASLSPELGT
1FVG Chain:A ((41-198))
-EGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSKDPDG-YC----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58772 for 1163 contacts (-50.5/contact) +
2D Compatibility (PS) -16599 + (NN) -12184 + (LL) 1924
1D Compatibility (HY) -8000 + (ID) 2900
Total energy: -96531.0 ( -83.00 by residue)
QMean score : 0.722
(partial model without unconserved sides chains):
PDB file :
Tito_1FVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FVG-query.scw
PDB file :
Tito_Scwrl_1FVG.pdb
: