Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS
2X48 Chain:A ((1-54))
----------------------------------------------------------------------------------MKKEIQVQGVRYYV-ESEDDLVSVAHELAKMGYTVQQIANALGVSERKVRRYLES------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2X48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23615 for 356 contacts (-66.3/contact) +
2D Compatibility (PS) -5895 + (NN) -2307 + (LL) 8288
1D Compatibility (HY) -2800 + (ID) 500
Total energy: -26829.0 ( -75.36 by residue)
QMean score : 0.723
(partial model without unconserved sides chains):
PDB file :
Tito_2X48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X48-query.scw
PDB file :
Tito_Scwrl_2X48.pdb
: