Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLTIFD-GALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTPPLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPGLTGSEPASLSKAAVNLLRT----GTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 4YYF Chain:A ((34-364)) | -----------------------------------------------------CDLAALPARDKLAQLLTVGVTDAADARAVVADHHVGGIMIGSWTDLSMLTDGSLGDIAASAAPLPLAVSVDEEGGRVSRLASLIG-SQPSARELARTKTADEVYGIALDRGRKMRDLGVTVDFAPVVDVTDAAADTVIGDRSFGSDPAVVTEYAGAYARGLRDAGVLPVLKHFPGHGHASGDSHTGGVTTPPLDVLMGDDLVPYRTLTGQAPVAVMVGHMQVPGLTGSDPASLSPAVYNLLRSGGYGGPG-----FGGLVYTDDLSSMGAINQRYGVADAVLRALQAGADNALWITTAEVPAVLDRLEQALASGELNQGAVDASLQRNAAVKGPLRC--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 21993 for 2822 contacts (7.8/contact) +
2D Compatibility (PS) -33258 + (NN) -2614 + (LL) 2552
1D Compatibility (HY) 13600 + (ID) 2500
Total energy: -227.0 ( -0.08 by residue)
QMean score : 0.109
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