Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVTGGVRSGKSTHAEALLGDAA---DVVYVAPGRPAAGS---DPDWDARVALH-RARR-PPTWLTVET-ADVATALSEARSPVLVDCLGTWLTAIMDGEALWSAATADVYAVLEARLDGLCAALTGLP-TAIVVTNEVGLGVVPSHSSGVLFRDLLGTINRR--------------VAAVCDEVHLVIAGRVLKL
4MKI Chain:B ((39-227))
-FVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYIN-GIDITDKKVSLKDIRKQVGLVFQYPEYQLFEETVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELA-DKSPFELSGGQKRRVAIAGIL--AMRPKILILDEPTAGLDPKG--KQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIE--
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84996 for 1126 contacts (-75.5/contact) +
2D Compatibility (PS) -17660 + (NN) -5002 + (LL) 104
1D Compatibility (HY) -1600 + (ID) 1300
Total energy: -110454.0 ( -98.09 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: