Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTVGSMNERVPDSSGLPLRAMVMVLLFLGVVFLLLVWQALGSSPNSEDDSSAISTMTTTTAAPTSTSVKPAAPRAEVRVYNISGTEGAAARTADRLKAAGFTVTDVGNLSLPDVAATTVYYTEVEGERATADAVGRTLGAAVELRLPELSDQPPGVIVVVTG
4OYD Chain:B ((1-117))
--ADPKKVLDKAKDQAENRVRELKQKLEELYKEA-----RKLD---------------------------LTQEMRRKLELRYIAAMLMAIGDIYNAIRQAKQEADKLKKAGLVNSQQLDELKRRLEELKEEASRKARDYGREFQLKLEY-------------G
General information:
TITO was launched using:
RESULT:
Template:
4OYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20986 for 757 contacts (-27.7/contact) +
2D Compatibility (PS) -12234 + (NN) -2051 + (LL) 2792
1D Compatibility (HY) 800 + (ID) 850
Total energy: -32529.0 ( -42.97 by residue)
QMean score : 0.172
(partial model without unconserved sides chains):
PDB file :
Tito_4OYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OYD-query.scw
PDB file :
Tito_Scwrl_4OYD.pdb
: