Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADQLTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTT-T-AA---AL--FGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID-KRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPG-SAPEPQT---DPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYT-TPFVTDPGLRSQVVGTIDFVD--DVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVERL |
| 3M5U Chain:A ((4-359)) | ----------------MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTKKAIKEAQILGV--NVKTVASSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQN--YPK-TKTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAG-ISGLSCIFIRKDMLERSKNK-----QIPSMLNYLTHA---ENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-KKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRI--LGGIRASIYNALNLDQVKTLCEFMKEFQGK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M5U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146478 for 2872 contacts (-51.0/contact) +
2D Compatibility (PS) -37379 + (NN) -25612 + (LL) 2012
1D Compatibility (HY) -10000 + (ID) 3350
Total energy: -220807.0 ( -76.88 by residue)
QMean score : 0.489
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