Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYG---PLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILP---AVRRAVAATRNGRIGVIGTRATITSHAYQDAFAAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2W4I Chain:E ((3-192))
-------IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEAL---DFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQV-EDKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIE---------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2W4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153389 for 1506 contacts (-101.9/contact) +
2D Compatibility (PS) -20060 + (NN) -6041 + (LL) 5796
1D Compatibility (HY) -18800 + (ID) 3350
Total energy: -195844.0 ( -130.04 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_2W4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W4I-query.scw
PDB file :
Tito_Scwrl_2W4I.pdb
: