Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
4Y96 Chain:B ((6-255))
-TRKKFVAGNWKMNTTLAEAKALGAAVAKGVTD---DRVTVAVFPPYPWLTAVGEVLKGSPVAL--GAQDVSSEKKGAFTGEVSPAMLLETGCKYALIGHSERRHIIGESETFINHKVHTALEEGLSVVLCMGETLAERERGLQERVFQRQVYAACAGLTDEQFGRIVIAYEPVWAIGTGKVATPEQAQEAHAFVRSKLRLLYGDKIADSTPIVYGGSVTPDNTVGLMSQPDVDGALVGGASLKADSF--LAIVKAAG---
General information:
TITO was launched using:
RESULT:
Template:
4Y96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160000 for 2187 contacts (-73.2/contact) +
2D Compatibility (PS) -28124 + (NN) -18985 + (LL) 692
1D Compatibility (HY) -20400 + (ID) 5900
Total energy: -232717.0 ( -106.41 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_4Y96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y96-query.scw
PDB file :
Tito_Scwrl_4Y96.pdb
: