Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNAVEDEGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQAE
5A3G Chain:A ((1-171))
------------------AGHMEIDKNVGADLISNTRRILRLDENELRITDTALICKNPNYSLCDAMLTTDIVY--------------PVEYLLSYWECRS------GRTACFVFKNTGCRVSLSCYIGFPERLKDLKRVCDFNFLSVNEALVVT--------LADIERIKPCDKGVLTNCVVRKSNSGMSYNIEVVAFGPDNEAEYQALLRDIYAR-----------------
General information:
TITO was launched using:
RESULT:
Template:
5A3G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103507 for 1254 contacts (-82.5/contact) +
2D Compatibility (PS) -18968 + (NN) -9135 + (LL) 4904
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -130456.0 ( -104.03 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_5A3G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A3G-query.scw
PDB file :
Tito_Scwrl_5A3G.pdb
: